From mboxrd@z Thu Jan 1 00:00:00 1970 From: Christophe Pouzat Subject: Implementing Reproducible Research Date: Fri, 15 Nov 2013 13:19:51 +0100 Message-ID: Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=089e016346360bada504eb363707 Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:56170) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1VhINR-0000NE-OT for emacs-orgmode@gnu.org; Fri, 15 Nov 2013 07:20:02 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1VhINM-0007M3-UV for emacs-orgmode@gnu.org; Fri, 15 Nov 2013 07:19:57 -0500 Received: from mail-ee0-x230.google.com ([2a00:1450:4013:c00::230]:49119) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1VhINM-0007Lx-Mm for emacs-orgmode@gnu.org; Fri, 15 Nov 2013 07:19:52 -0500 Received: by mail-ee0-f48.google.com with SMTP id e49so1025454eek.21 for ; Fri, 15 Nov 2013 04:19:51 -0800 (PST) List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org --089e016346360bada504eb363707 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Hi all, I've just seen that a book, Implementing Reproducible Research, edited by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC. I was wondering if anyone has written a chapter presenting org for it. Any clue? Christophe --=20 A Master Carpenter has many tools and is expert with most of them. If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5 CNRS UMR 8145 45, rue des Saints-P=C3=A8res 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://xtof.disque.math.cnrs.fr --089e016346360bada504eb363707 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi all,

I've just seen that a book,= =C2=A0Implementing Reproducible Research, edited= by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC. I w= as wondering if anyone has written a chapter =C2=A0presenting org for it. A= ny clue?

Christophe

--
A Master Carpenter has many tools and is expert with most = of them. If you only know how to use a hammer, every problem starts to look= like a nail. Stay away from that trap.

Richard B Johnson.

--

Christ= ophe Pouzat
MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5
= CNRS UMR 8145
45, rue des Saints-P=C3=A8res
75006 PARIS
France
=
tel: +33142863828
mobile: +33662941034
web: http://xtof.disque.math.cnrs.fr
--089e016346360bada504eb363707-- From mboxrd@z Thu Jan 1 00:00:00 1970 From: tsd@tsdye.com (Thomas S. Dye) Subject: Re: Implementing Reproducible Research Date: Fri, 15 Nov 2013 07:31:38 -1000 Message-ID: References: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:48166) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1VhNFf-0003NP-3I for emacs-orgmode@gnu.org; Fri, 15 Nov 2013 12:32:21 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1VhNFX-00027j-QE for emacs-orgmode@gnu.org; Fri, 15 Nov 2013 12:32:15 -0500 Received: from oproxy9-pub.mail.unifiedlayer.com ([69.89.24.6]:35825) by eggs.gnu.org with smtp (Exim 4.71) (envelope-from ) id 1VhNFX-00026j-JW for emacs-orgmode@gnu.org; Fri, 15 Nov 2013 12:32:07 -0500 In-Reply-To: (Christophe Pouzat's message of "Fri, 15 Nov 2013 13:19:51 +0100") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Christophe Pouzat Cc: emacs-orgmode@gnu.org Aloha Christophe, Thanks for spotting this. I don't know if anyone has written a chapter presenting org. I haven't seen anything on the ML. All the best, Tom Christophe Pouzat writes: > Hi all, > > I've just seen that a book, Implementing Reproducible > Research, > edited by V. Stodden, F. Leisch and R. Peng is coming out next year from > CRC. I was wondering if anyone has written a chapter presenting org for > it. Any clue? > > Christophe > > --=20 > A Master Carpenter has many tools and is expert with most of them. If you > only know how to use a hammer, every problem starts to look like a nail. > Stay away from that trap. > > Richard B Johnson. > > -- > > Christophe Pouzat > MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5 > CNRS UMR 8145 > 45, rue des Saints-P=C3=A8res > 75006 PARIS > France > > tel: +33142863828 > mobile: +33662941034 > web: http://xtof.disque.math.cnrs.fr > Hi all, > > I've just seen that a book, Implementing Reproducible Research, edited > by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC. > I was wondering if anyone has written a chapter presenting org for it. > Any clue? > > Christophe --=20 Thomas S. Dye http://www.tsdye.com From mboxrd@z Thu Jan 1 00:00:00 1970 From: Christophe Pouzat Subject: Implementing Reproducible Research Date: Thu, 29 May 2014 15:54:35 +0200 Message-ID: Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=047d7bb04feeefccab04fa8a44a4 Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:60887) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Wq0n3-0004lr-Cg for emacs-orgmode@gnu.org; Thu, 29 May 2014 09:54:42 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1Wq0n0-0006Uy-Ag for emacs-orgmode@gnu.org; Thu, 29 May 2014 09:54:41 -0400 Received: from mail-wi0-x230.google.com ([2a00:1450:400c:c05::230]:42287) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Wq0n0-0006Qo-3c for emacs-orgmode@gnu.org; Thu, 29 May 2014 09:54:38 -0400 Received: by mail-wi0-f176.google.com with SMTP id n15so5606634wiw.15 for ; Thu, 29 May 2014 06:54:35 -0700 (PDT) List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org --047d7bb04feeefccab04fa8a44a4 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Hi All, The book "Implementing Reproducible Research" edited by V. Stodden, F. Leisch and R. D. Peng came out last month (I don't have a copy) and I just found out that you can get the chapters (in PDF) from the editors' site: https://osf.io/s9tya/ I did not have enough time to go trhough all of it but org is mentioned a couple of times! Christophe --=20 A Master Carpenter has many tools and is expert with most of them. If you only know how to use a hammer, every problem starts to look like a nail. Stay away from that trap. Richard B Johnson. -- Christophe Pouzat MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5 CNRS UMR 8145 45, rue des Saints-P=C3=A8res 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://xtof.disque.math.cnrs.fr --047d7bb04feeefccab04fa8a44a4 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Hi All,

The book "Impleme= nting Reproducible Research" edited by V. Stodden, F. Leisch and R. D.= Peng came out last month (I don't have a copy) and I just found out th= at you can get the chapters (in PDF) from the editors' site: https://osf.io/s9tya/
I did not have enough time to go= trhough all of it but org is mentioned a couple of times!

Christophe

--
A Master Carpenter has many tools and= is expert with most of them. If you only know how to use a hammer, every p= roblem starts to look like a nail. Stay away from that trap.

Richard B Johnson.

--

Christophe Pouz= at
MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5
CNRS UMR = 8145
45, rue des Saints-P=C3=A8res
75006 PARIS
France

tel: = +33142863828
mobile: +33662941034
web: http://xtof.disque.math.cnrs.fr
--047d7bb04feeefccab04fa8a44a4-- From mboxrd@z Thu Jan 1 00:00:00 1970 From: tsd@tsdye.com (Thomas S. Dye) Subject: Re: Implementing Reproducible Research Date: Sun, 01 Jun 2014 10:33:40 -1000 Message-ID: References: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:39009) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1WrCS8-00055v-MV for emacs-orgmode@gnu.org; Sun, 01 Jun 2014 16:34:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1WrCS3-0005fa-9z for emacs-orgmode@gnu.org; Sun, 01 Jun 2014 16:34:00 -0400 Received: from gproxy5-pub.mail.unifiedlayer.com ([67.222.38.55]:36206) by eggs.gnu.org with smtp (Exim 4.71) (envelope-from ) id 1WrCS3-0005fU-1t for emacs-orgmode@gnu.org; Sun, 01 Jun 2014 16:33:55 -0400 In-Reply-To: (Christophe Pouzat's message of "Thu, 29 May 2014 15:54:35 +0200") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Christophe Pouzat Cc: emacs-orgmode@gnu.org Aloha Christophe, Chapter 8, Reproducible Research for Large-Scale Data Analysis, by Holger Hoefling and Anthony Rossini uses Org mode for literate programming and for reproducible research. The article focuses on the challenges faced by a large-scale data analysis, where the full R code base might run hours or days to produce a final result. The working solution involves a program, makepp, that implements make based on hash codes of files, rather than timestamps, which change with every tangling. Org mode was clearly central to the work. It is favorably compared to the tools sweave and knitr familiar to R programmers. Thanks for pointing this out. All the best, Tom Christophe Pouzat writes: > Hi All, > > The book "Implementing Reproducible Research" edited by V. Stodden, F. > Leisch and R. D. Peng came out last month (I don't have a copy) and I just > found out that you can get the chapters (in PDF) from the editors' site: > https://osf.io/s9tya/ > I did not have enough time to go trhough all of it but org is mentioned a > couple of times! > > Christophe > > --=20 > A Master Carpenter has many tools and is expert with most of them. If you > only know how to use a hammer, every problem starts to look like a nail. > Stay away from that trap. > > Richard B Johnson. > > -- > > Christophe Pouzat > MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5 > CNRS UMR 8145 > 45, rue des Saints-P=C3=A8res > 75006 PARIS > France > > tel: +33142863828 > mobile: +33662941034 > web: http://xtof.disque.math.cnrs.fr > Hi All, > > The book "Implementing Reproducible Research" edited by V. Stodden, F. > Leisch and R. D. Peng came out last month (I don't have a copy) and I > just found out that you can get the chapters (in PDF) from the > editors' site: https://osf.io/s9tya/ > I did not have enough time to go trhough all of it but org is > mentioned a couple of times! > > Christophe --=20 Thomas S. Dye http://www.tsdye.com