Re: Very slow execution, tangling and export with noweb and quick-and-dirty

[Rainer M Krug <Rainer@krugs.de>]

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Rainer M Krug <Rainer@krugs.de> writes:

> Hi
>
> I have a rather extensive literate programming document with several
> hundred code blocks. In two subtrees, I use :noweb. Each of these has one
> noweb block which is located onder the first level header, and used several
> times in the sub-sections of this tree.
>
> But even with the quick-and-dirty option
>
> ,----
> | #+BIND: org-babel-use-quick-and-dirty-noweb-expansion "t"
> `----
>

Hm - I just realised that despite having this #+BIND: in the file, the
variable was not set. I set it manually now, and it is fast again.

Shouldn't this BIND set the variable to true?

Rainer


> execution, tangling and export takes very long (one block about 12
> seconds, of which about 2 seconde=s max execution time of the code block).
>
> Is this a general problem of noweb expansion? How can I make this
> faster?
>
> I really want to use the noweb, because the block is rather dynamic and
> used several times in the subrtree.
>
> Below the report from the profiler.
>
> Any suggestions welcome,
>
> Rainer
>
>
> ,----
> | - command-execute                                                2024  90%
> |  - call-interactively                                            2024  90%
> |   - org-ctrl-c-ctrl-c                                            1966  88%
> |    - run-hook-with-args-until-success                            1966  88%
> |     - org-babel-execute-safely-maybe                             1966  88%
> |      - org-babel-execute-maybe                                   1966  88%
> |       - org-babel-execute-src-block-maybe                        1966  88%
> |        - org-babel-execute-src-block                             1966  88%
> |         - org-babel-expand-noweb-references                      1890  84%
> |          - org-babel-get-src-block-info                          1884  84%
> |           - org-babel-parse-src-block-match                      1680  75%
> |            - org-babel-params-from-properties                    1667  74%
> |             - mapcar                                             1602  71%
> |              - #<compiled 0x41e1ae65>                            1601  71%
> |               - org-entry-get                                    1598  71%
> |                - org-entry-get-with-inheritance                  1576  70%
> |                 - byte-code                                      1575  70%
> |                  - org-up-heading-safe                           1006  45%
> |                   - org-back-to-heading                           109   4%
> |                    - outline-back-to-heading                       56   2%
> |                       outline-on-heading-p                          7   0%
> |                     org-outline-level                              61   2%
> |                  - org-property--local-values                     515  23%
> |                   - org-get-property-block                        351  15%
> |                    - org-back-to-heading                           69   3%
> |                     - outline-back-to-heading                      46   2%
> |                        outline-on-heading-p                         9   0%
> |                      org-before-first-heading-p                    45   2%
> |                  member-ignore-case                                 5   0%
> |                + org-entry-properties                               2   0%
> |             + org-entry-get                                        50   2%
> |             + org-babel-parse-header-arguments                     11   0%
> |               org-babel-combine-header-arg-lists                    1   0%
> |               byte-code                                             1   0%
> |            + org-babel-parse-header-arguments                       5   0%
> |            + apply                                                  4   0%
> |            + org-unescape-code-in-string                            2   0%
> |              generate-new-buffer                                    1   0%
> |              match-string-no-properties                             1   0%
> |           + org-babel-generate-file-param                         201   9%
> |           + org-babel-where-is-src-block-head                       1   0%
> |          + org-babel-ref-goto-headline-id                           2   0%
> |         + org-babel-execute:R                                      58   2%
> |         + org-babel-get-src-block-info                             10   0%
> |         + run-hooks                                                 7   0%
> |         + org-babel-insert-result                                   1   0%
> |   + smex                                                           58   2%
> | + ...                                                             200   8%
> | + timer-event-handler                                               4   0%
> | + redisplay_internal (C function)                                   2   0%
> | + flyspell-post-command-hook                                        2   0%
> `----

-- 
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa

Tel :       +33 - (0)9 53 10 27 44
Cell:       +33 - (0)6 85 62 59 98
Fax :       +33 - (0)9 58 10 27 44

Fax (D):    +49 - (0)3 21 21 25 22 44

email:      Rainer@krugs.de

Skype:      RMkrug

PGP: 0x0F52F982

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