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From: "George Kettleborough (EI)" <george.kettleborough@earlham.ac.uk>
To: emacs-orgmode@gnu.org
Subject: ob-shell: using a table variable with bash
Date: Fri, 3 Mar 2017 12:40:54 +0000	[thread overview]
Message-ID: <1811afdb-ffe4-37e7-9858-19b22d7ff2ed@earlham.ac.uk> (raw)

[-- Attachment #1: Type: text/plain, Size: 1110 bytes --]

Hello,

I recently updated my org-mode from version 7 (I think) to the latest. 
The behaviour of using a table as a variable in a shell code source 
block has changed. I use to use it like this:

#+BEGIN_SRC sh :results output :var table=synteny-names :separator ,
   IFS=','
   while read col1 col2; do
       # do stuff
   done <<EOF
   $table
   EOF
#+END_SRC

This just stopped working with the new version and I could not figure 
out why for a long time. But I looked in the new ob-shell.el code and 
figured out that when the shell is bash it now makes an associative 
array if the variable is a table. I couldn't seem to find this 
documented anywhere.

This new behaviour seems like it would be useful in a lot of cases, but 
in my case, the tables are not key-value pairs, they are merely things I 
want to iterate over. I wonder if simply checking to see if :separator 
is set and using the old behaviour if so would be better? This would 
seem to be a fine fix which maintains backwards compatibility unless 
there is a reason to set :separator but still expect the new behaviour.

Thanks,

George.

[-- Attachment #2: ob-shell.patch --]
[-- Type: text/x-patch, Size: 661 bytes --]

diff --git a/site-lisp/org/ob-shell.el b/site-lisp/org/ob-shell.el
index 9c22af8..6f5f76e 100644
--- a/site-lisp/org/ob-shell.el
+++ b/site-lisp/org/ob-shell.el
@@ -140,7 +140,7 @@ This function is called by `org-babel-execute-src-block'."
 
 (defun org-babel--variable-assignments:bash (varname values &optional sep hline)
   "Represents the parameters as useful Bash shell variables."
-  (if (listp values)
+  (if (and (listp values) (null sep))
       (if (and (listp (car values)) (= 1 (length (car values))))
 	  (org-babel--variable-assignments:bash_array varname values sep hline)
 	(org-babel--variable-assignments:bash_assoc varname values sep hline))

             reply	other threads:[~2017-03-03 23:16 UTC|newest]

Thread overview: 3+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2017-03-03 12:40 George Kettleborough (EI) [this message]
2017-03-08  8:24 ` ob-shell: using a table variable with bash Nicolas Goaziou
2017-03-08 11:27   ` George Kettleborough

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